Not really, bro. There has been a lot of miscommunication that has happened between the central administration, the state government, and the locals. Nagas are an amazing people; very honest, decent, and hardworking people like most of us folks in the region. They are simple and have been taken for a ride for too long by the central government since Tharki Chacha's time (tribal protection policies that kept most NE isolated from the rest of India). From being shown the dreams of a safe and prosperous state, to being collateral between the egos of local CMs, the central government, and the resultant terrorist groups that are on Chinese payroll, the people naturally have their reasons to be a bit wary. But still, Nagas love India and the majority still want to be called Indians.
To make it worse, places like Delhi (where most NE students get their first exposure due to college quotas), really confuse first-timers about what exactly their identity is. Initially, they went there with a sense of belonging, but were called fugly names and were hated against. So they became even more wary and distant. Can you blame them entirely? I am talking about the common naga guy or girl who just stepped out for the first time, with dreams in their eyes and a general sense of Indianness.
However, that being said, right now, the onus is on the Nagas as much as PM Modi Ji, who is putting a lot of effort (the most by any Indian PM) to get all the states of the northeast integrated well. That's why people have a raised trust in him in the region. Though the recent Nagaland CT operation ended in a tragedy, people are not against the government. It will take time to heal but people trust PM Modi ji who has shown his intentions and proven himself different from others.