Why not? It shows how far and advanced the technology is. Methane engines only makes sense if you were doing interplanetary travel. Otherwise there is no reason to do methalox engine as Hydrogen and LOX gives better impulse. The reason that Musk went for methalox engines was because he could produce the necessary fuel on Mars to have a return trip.
There is the problem.
There is something called equilibrium to be achieved when we talk of rocket science.
1- Kerolox engine: The cheapest of all in operation, but when it comes to commercial use, the costliest of all. Having the lowest impulse, the transfer weight is lowest of all. Harmful from environment POV too.
2- Hydrolox engine: The cheapest of all from commercial POV, but costliest of all from operational POV.
3- Methalox engine: Its a compromise in between 1 and 2. So, its not just for interplanetary travel, but for commercial use also.
Now coming to why I am saying to compare NGLV with Starship, its because of the development of Methalox engine. Falcon 9 use Kerolox engine just like our launch vehicle. Its the Methalox which is making the whole difference.
Yes, we can differentiate in between both on terms of engine cycle technology. Raptor is much more of a complicated and efficient engine then ours, but when it comes to payload lift off, we could easily enhance it provided we have the engine tech, which we already have.